SQL files not from last state?

After starting up my computer this morning, I was met with a container missing error. In a rush I tried fixing it with the automatic prompt, which resulted in a hang due to my internet dropping out (In rural Australia) I tried restoring the site from using the FAQ by renaming my local sites folder to something else and deleting the site, then recreating it.
After this not working due to a hang up I actually just tried to reimport a .zip folder I made using the Local site’s set up with the app, conf and logs folder. Local analysed the archive and created the site no problems. However, the site was back in it’s orginal blue print (with all my new plugins and set up that I’ve made to the site since working on it - even the woocommerce plugins I installed last night,) but with no pages, posts or uploads, etc… I checked my zip folder (and the original site folder) and the the sql files inside there were all original .sql files from when I installed the blueprint I have.
Is there another folder with backed up sql files at all? This isn’t making any sense to me, as my all the latest plugins and even my image uploads are all there, but my sql files are not the latest.

Please help. Otherwise it looks like I’m rebuilding a couple days worth of work, as I hadn’t made any actual backups or pushed it to a live site. That’ll learn me.

(Some logs below from the mysql log of my site and the local logs)

2018-11-14 07:05:40 569 [Note] InnoDB: Database was not shutdown normally!
2018-11-14 07:05:40 569 [Note] InnoDB: Starting crash recovery.
2018-11-14 07:05:40 569 [Note] InnoDB: Reading tablespace information from the .ibd files…
2018-11-14 07:05:40 569 [Note] InnoDB: Restoring possible half-written data pages
2018-11-14 07:05:40 569 [Note] InnoDB: from the doublewrite buffer…
2018-11-14 07:05:40 569 [Note] InnoDB: 128 rollback segment(s) are active.
2018-11-14 07:05:40 569 [Note] InnoDB: Waiting for purge to start
2018-11-14 07:05:40 569 [Note] InnoDB: 5.6.34 started; log sequence number 41003721
2018-11-14 07:05:40 569 [Note] Server hostname (bind-address): ‘’; port: 3306
2018-11-14 07:05:40 569 [Note] IPv6 is available.
2018-11-14 07:05:40 569 [Note] - ‘::’ resolves to ‘::’;
2018-11-14 07:05:40 569 [Note] Server socket created on IP: ‘::’.
2018-11-14 07:05:40 569 [Note] Event Scheduler: Loaded 0 events
2018-11-14 07:05:40 569 [Note] /usr/sbin/mysqld: ready for connections.
Version: ‘5.6.34’ socket: ‘/var/run/mysqld/mysqld.sock’ port: 3306 MySQL Community Server (GPL)
181115 01:31:09 mysqld_safe Starting mysqld daemon with databases from /var/lib/mysql
2018-11-15 01:31:09 0 [Warning] Using unique option prefix key_buffer instead of key_buffer_size is deprecated and will be removed in a future release. Please use the full name instead.
2018-11-15 01:31:09 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see documentation for more details).
2018-11-15 01:31:09 0 [Note] /usr/sbin/mysqld (mysqld 5.6.34) starting as process 485 …
2018-11-15 01:31:10 485 [Warning] Using unique option prefix myisam-recover instead of myisam-recover-options is deprecated and will be removed in a future release. Please use the full name instead.
2018-11-15 01:31:10 485 [Note] Plugin ‘FEDERATED’ is disabled.
2018-11-15 01:31:10 485 [Note] InnoDB: Using atomics to ref count buffer pool pages
2018-11-15 01:31:10 485 [Note] InnoDB: The InnoDB memory heap is disabled
2018-11-15 01:31:10 485 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2018-11-15 01:31:10 485 [Note] InnoDB: Memory barrier is not used
2018-11-15 01:31:10 485 [Note] InnoDB: Compressed tables use zlib 1.2.8
2018-11-15 01:31:10 485 [Note] InnoDB: Using Linux native AIO
2018-11-15 01:31:10 485 [Note] InnoDB: Using CPU crc32 instructions
2018-11-15 01:31:10 485 [Note] InnoDB: Initializing buffer pool, size = 32.0M
2018-11-15 01:31:10 485 [Note] InnoDB: Completed initialization of buffer pool
2018-11-15 01:31:10 485 [Note] InnoDB: Highest supported file format is Barracuda.
2018-11-15 01:31:10 485 [Note] InnoDB: The log sequence numbers 1600309 and 1600309 in ibdata files do not match the log sequence number 43833743 in the ib_logfiles!
2018-11-15 01:31:10 485 [Note] InnoDB: Database was not shutdown normally!
2018-11-15 01:31:10 485 [Note] InnoDB: Starting crash recovery.
2018-11-15 01:31:10 485 [Note] InnoDB: Reading tablespace information from the .ibd files…
2018-11-15 01:31:10 485 [Note] InnoDB: Restoring possible half-written data pages
2018-11-15 01:31:10 485 [Note] InnoDB: from the doublewrite buffer…
2018-11-15 01:31:10 485 [Note] InnoDB: 128 rollback segment(s) are active.
2018-11-15 01:31:10 485 [Note] InnoDB: Waiting for purge to start
2018-11-15 01:31:10 485 [Note] InnoDB: 5.6.34 started; log sequence number 43833743
2018-11-15 01:31:10 485 [Note] Server hostname (bind-address): '
’; port: 3306
2018-11-15 01:31:10 485 [Note] IPv6 is available.
2018-11-15 01:31:10 485 [Note] - ‘::’ resolves to ‘::’;
2018-11-15 01:31:10 485 [Note] Server socket created on IP: ‘::’.
2018-11-15 01:31:10 485 [Note] Event Scheduler: Loaded 0 events
2018-11-15 01:31:10 485 [Note] /usr/sbin/mysqld: ready for connections.
Version: ‘5.6.34’ socket: ‘/var/run/mysqld/mysqld.sock’ port: 3306 MySQL Community Server (GPL)

Nov 15, 2018, 10:28 AM GMT+11 - info: [main/docker-machine] Running C:\Users\Phil\AppData\Local\Programs\local-by-flywheel\resources\extraResources\virtual-machine\vendor\docker\windows\docker-machine.exe start local-by-flywheel
Nov 15, 2018, 10:28 AM GMT+11 - info: [main/docker-machine] Starting “local-by-flywheel”…
Nov 15, 2018, 10:28 AM GMT+11 - info: [main/docker-machine] (local-by-flywheel) Check network to re-create if needed…
Nov 15, 2018, 10:28 AM GMT+11 - info: [main/docker-machine] (local-by-flywheel) Windows might ask for the permission to configure a dhcp server. Sometimes, such confirmation window is minimized in the taskbar.
Nov 15, 2018, 10:28 AM GMT+11 - info: [main/docker-machine] (local-by-flywheel) Waiting for an IP…
Nov 15, 2018, 10:29 AM GMT+11 - info: [main/docker-machine] Machine “local-by-flywheel” was started.
Nov 15, 2018, 10:29 AM GMT+11 - info: [main/docker-machine] Waiting for SSH to be available…
Nov 15, 2018, 10:29 AM GMT+11 - info: [main/docker-machine] Detecting the provisioner…
Nov 15, 2018, 10:29 AM GMT+11 - info: [main/docker-machine] Started machines may have new IP addresses. You may need to re-run the docker-machine env command.
Nov 15, 2018, 10:29 AM GMT+11 - info: [main/set-docker-env] Getting Docker Machine env.
Nov 15, 2018, 10:29 AM GMT+11 - info: [main/set-docker-env] Received Docker Machine env. export DOCKER_TLS_VERIFY=“1”
export DOCKER_HOST=“tcp://192.168.95.100:2376”
export DOCKER_CERT_PATH=“C:\Users\Phil.docker\machine\machines\local-by-flywheel”
export DOCKER_MACHINE_NAME=“local-by-flywheel”
export COMPOSE_CONVERT_WINDOWS_PATHS=“true”

Run this command to configure your shell:

eval $(“C:\Users\Phil\AppData\Local\Programs\local-by-flywheel\resources\extraResources\virtual-machine\vendor\docker\windows\docker-machine.exe” env --shell bash local-by-flywheel)

Nov 15, 2018, 10:29 AM GMT+11 - info: [main/docker-machine] checking IP
Nov 15, 2018, 10:29 AM GMT+11 - info: [main/docker-machine] checked IP 192.168.95.100

Nov 15, 2018, 10:29 AM GMT+11 - info: [main/docker-machine-fdv] NFS Mount Status
{ mountedPoints: [ ‘/c/Users’ ], mountPoints: [ ‘/c/Users’ ] }
Nov 15, 2018, 10:29 AM GMT+11 - info: [main/docker-machine-fdv] WinNFSd already running
Nov 15, 2018, 12:31 PM GMT+11 - info: [EnvironmentCustom] Empty /etc/mysql
Nov 15, 2018, 12:31 PM GMT+11 - info: [EnvironmentCustom] Copying MySQL config to container prior to starting.
Nov 15, 2018, 12:31 PM GMT+11 - info: [main/waitForFile] Waiting for /conf/php/7.2.0/etc/php-fpm.conf 670901ad974457575728ea4d8da62aac2275bc50690099903dfdb711e7c02c05
Nov 15, 2018, 12:31 PM GMT+11 - info: [main/docker-router] getRouterContainers()
Nov 15, 2018, 12:31 PM GMT+11 - info: [main/docker-router] teardown()
Nov 15, 2018, 12:31 PM GMT+11 - info: [main/docker-router] Removing router container ae9fce64d1479ca74be2009b66d2e790bab55cf233cc6d79cee5900cd9e5c94c
Nov 15, 2018, 12:31 PM GMT+11 - info: [main/waitForFile] /conf/php/7.2.0/etc/php-fpm.conf exists
Nov 15, 2018, 12:31 PM GMT+11 - info: [main/docker-router] updateProxyManager()
Nov 15, 2018, 12:31 PM GMT+11 - info: [main/docker-router] runContainer()
Nov 15, 2018, 12:31 PM GMT+11 - info: [main/docker-network-manager] removeExistingNetworks
Nov 15, 2018, 12:31 PM GMT+11 - info: [main/docker-network-manager] createNetwork
Nov 15, 2018, 12:31 PM GMT+11 - info: [main/docker-router] reconnectNetwork()
Nov 15, 2018, 12:31 PM GMT+11 - info: [EnvironmentCustom] Starting php-fpm done
Nov 16, 2018, 10:44 AM GMT+11 - info: [main/EnvironmentLoader] Environment does not have package.json: C:\Users\Phil\AppData\Roaming\Local by Flywheel\environments\custom\package.json